549 apptainer -q run apptainer/python-ubuntu.sif bash -xc 'g++ -Isrc/cpp -Iexternals/install/pytorch/pytorch-main-commit-393c8054edc/include/torch/csrc/api/include ...
Detailed explanations of all output files can be found in our TOGA2 Wiki. Paralog annotation is now possible even for transcripts with existing orthologous chains with --annotate_paralogs flag.
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